The class-II MHC molecules are termed HLA-DQ,DP and DR. Only the DR genes are felt to be of clinical importance in transplantation.
In the class-II region are also found the TAP1 and TAP2 genes whose combined product, a protease, controls the intracellular formation and subsequent expression of MHC molecules on the cell surface. [KPK$^+$92]
In contrast to the class-I molecules which are expressed on virtually all cells, class-II molecules expression is restricted. In the main class-II molecules are expressed on the surface of antigen presenting cells. They are found on non-resting T lymphocytes and on capillary endothelial cells.
Interferon- and other pro-inflammatory cytokines may bind to the promoter region of the class-II genes and initiate transcription.
The class-II molecule is composed of two MHC-encoded and non-covalently associated polymorphic chains, and . Each of these is composed of two extracellular domaines. There is a polymorphic groove for binding small peptides which fits a peptide of length 12 amino-acids. The other domain on the chain is a receptor for CD4 (on helper T lymphocytes).
Class-II molecules play a central role in the initiation of the immune response to transplantation antigens. Recognition of foreign class-II molecules activates helper CD4 T cells which then begin the process of clonal expansion and releasing cytokines that stimulate the clonal expansion of cytotoxic T cells.